PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02366.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 443aa    MW: 43932.6 Da    PI: 6.5197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02366.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12220265555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pahal.F02366.1 220 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 265
                     99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.72E-13213269No hitNo description
SuperFamilySSF474599.03E-17213275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16217274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9220265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MQPGGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG AKSPWELPAG AEDAAVQAAF  60
GDDSSALLVS RLRQHQIGGD VVKSSPSSSP VMLQLSDLHR HGGGLAGAGA EESAGFSPLP  120
LFTDRSAPAR EEMEGGFRSP NSAQGGDHSM FNGFGMHGAA AVQPQFAQGG SVSPQSLGGP  180
AVSGGATTPA GGAASSAGGG AAPPRQVRQR ARRGQATDPH SIAERLRRER IAERMKSLQE  240
LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA GMAPLVASMS SEGNSNGSSS  300
NSGGGAKGSA ATKANGNGSG ENGNGGGGLR VAENQVAKMM EEDMGTAMQY LQGKGLCLMP  360
ISLASAISSA TSSASLLSRP PPVLRHPAAT AASPAPPGQP HDASNCAAAA AAATSPASAS  420
SAGGGGDDPR STKDVGGGGG KQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620768e-63BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279388e-63KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964663.10.0PREDICTED: transcription factor bHLH82
SwissprotQ9ZUG98e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLI1H0C61e-156I1H0C6_BRADI; Uncharacterized protein
STRINGBRADI1G47350.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-37LJRHL1-like 2